Two days later, they all returned to Eldriym after saving the entire universe from destruction. The magisterium and the elves choose to handle the damage done to the earth that had been damaged by the gods' presence and it turns out that they were feeding on the people's aura to get stronger by making followers.
Most gods surrendered because they were pacifists and were sent to another realm where they couldn't harm anyone else with their presence as a security measure, the gates that were built between worlds were closed permanently and only those who were powerful enough could jump between worlds. Those of the ranks of Jack and Kendall, who had unlocked the ability unknowingly.