~5 years later~
We see a blonde haired 13 year old stood on top of the gates to Konohagakure no Sato, the blode was about 5'4" with his hair tied up in a ponytail, his outfit consisted of a black hoodie with a small Uchiha fan on the end of the tassels which were tied together to stop them from getting in his way, he also wore black cargo pants with many pockets on, a kunai pouch with a shuriken holster and a scroll holder for small sealing scrolls, his feet were protected by full toed shinobi boots and the bottom of his pants were taped down with dark grey shinobi tape, all in all he looked like an 'ideal' shinobi as the owner of the Higurashi weapon store said, oh and this person is our protagonist Uchiha Naruto. Currently Naruto is preparing himself for his graduation exams from the academy by calming his body through meditation whilst also making a grin that Kurama would be proud of, why was he grinning? Well he currently had a bunch of seals hidden in the houses of certain coucil members, cough civilian cough, and was waiting for 7:30 am to be in the academy before Iruka, his Sensei, was there.
As if by fate his small alarm clock next to him and he left for the academy in a Shunshin which he was taught by none other than Shisui, who was Naruto's remaining immediate family member in the village, until the Uchiha Massacre where Itachi Uchiha, in a sense, slaughtered all his clan members other than Sasuke, why he didn't get Naruto though is because Naruto was prewarned about the Uchiha clan planning a Coup d'état to over throw the Hokage and the leaders of Konoha and the land of Fire, as soon as Naruto found out from Shisui he hid himself from the Uchiha clan in a bunker only his parents and family knew about (A/N Hikari, Minato and their parents) after he knew the slaughter finished as he sensed Itachi's chakra leave the Leaf village Naruto went home and started to act shocked to take suspicion away from him, which he soon regretted as he was treated as a Prince of the village along side his only remaining clan member who changed for the worse in his opinion. Naruto slowly put on a mask over time to hide all of his training progress as he didn't want any of the villagers praise after all they were the villagers who disrespected him and his mother when she was still alive. But after today everything changed, Naruto was going to make everyone believe he is the dobe when in reality he was as strong as a mid-jonin level shinobi but he lacked the experience.
Over the years his friendship with Kurama got better and he even found out from Kurama about the Mangekyou Sharingan and the fact he unlocked it, he found this out when he was 10 and asked Kurama what it meant, Kurama explained what the Mangekyou was, the skills he could possibly have with them and what negative effects it could have if he overused it, because of that Naruto trained with it lightly until he mastered the abilities of his right eye, but the abilities he got in both his eyes were Amaterasu and Kotoamatsukami, Amaterasu in his right eye and Kotoamatsukami in his left, he trained Amaterasu until he was able to activate it witht he mental command and it took an instant to ignite the target and in Kotoamatsukami he found out he couldn't efficiently train with it as it took a year for his eyes to recover and that was only thanks to Kurama and his Senju blood assisting the cooldown for the eye to recover, he also started to work on his Susanoo where he got it to the full skeletal body and didn't want to push it futher as the ability was draining his chakra even with the near infinite chakra battery he had known as the Nine-tails chakra, which he didn't enjoy taking as it wasn't his Chakra but his best friend's, his vision was at about 80% of what it originally was but he wanted to push his eyes until he had at least 10% of his vision remaining and even then he had his sensory abilities which Kurama gave him.
Over the years he's practiced all the shinobi arts such as, fuinjutsu, tai, nin, gen, ken and iryo (medical), although he couldn't pull off any iryo ninjutsu he still studied it to assist in making medical seals for the active shinobi, he also used his knowledge of Iryo-ninjutsu to run a check on his mother's symptoms and then hand them to Tsunade for whenever he saw her for her professional standpoint, over the years he and Tsunade got to know each other through letter they sent each other monthly as she was his remaining family whether she was in the village or not. He remembers the first letter he got where she warned him to avoid talking to someone called Danzo Shimura, which to him just sounded weird as he hadn't even heard of this Danzo until some old man spoke to him claiming to be Danzo and wanting Naruto to train under him, Naruto refused saying that he already had someone training him but still kept silent on who it was, anyways back to the main story and enough about side stories that will be mentioned in later chapters.
Naruto was sat in his usual spot, the top of the classroom next to the window as he yawned softly and muttered a small troublesome before freezing and mumbling "Oh god I sounded like Shika there" he shivered making a certain lazy pineapple haired Nara sneeze and mutter a troublesome. As Naruto was muttering about sounding like Shikamaru, another of his best friends Iruka Umino, Naruto and his class' sensei walked in only to see Naruto sat in his chair. He chuckled catching the attention of the only other occupant of the room. "Oh hey Iruka-Sensei" Naruto said to one of the only people he had full conversations with.
"Good Morning Naruto, but I was expecting you to change next week not today" Iruka said in good nature making Naruto smile softly.
"Now seemed like a better time after all they need to see that I'm not the Orange wearing Dobe anymore" Naruto muttered as he heard someone yawn which made him smile inwardly whilst thinking 'Good morning Kurama' as he got a deep grumble as a reply as his first bestfriend was about to yawn.
While Naruto was conversing with Kurama the rest of the class came in and looked at him confused by his outfit change but found it easier on the eyes over his kill me orange jumpsuit, it wasn't until Shikamaru and Choji walked in that Naruto paid attention and smiled softly at them, Shikamaru smirked softly and sat in the chair next to him before saying "Hey Naruto, wasn't expecting you to take your mask off so soon" as soon as the sentence left his mouth everyone looked to the three in surprise as Naruto glared at Shikamaru making him smirk mirthfully.
"Yeah Shika and I'm sure half of us didn't expect your lazy ass to wake up till about midday, what's with that?" Naruto asked with a smirk as everyone looked at them confused as Shikamaru continued.
"Well I had a wonderful sleep last night and thought since it's exam day I could sleep after finishing" Shikamaru said and was about to continue but was stopped when Choji spoke up.
"You two really don't change much huh?" Choji smirked and sat down "After all Shika you always sleep after exams"
Shikamaru nodded and stretched with a large yawn "Yeah I only sleep after because my kaa-chan is too troublesome especially when it comes to exams" Shikamaru shivered making Naruto and Choji chuckle at their friends expense. After everything was said they sat silently as the rest of the class until Sasuke came in with his arrogant grin and that's when Naruto covered his ears, as if on cue the fangirls just screamed and surrounded Sasuke asking for dates and whatnot. This went on until Iruka had enough and shouted silencing the class and making all the fangirls retreat to their seats as Naruto just smirked. After 30 seconds the door flung open and in ran? Walked? Whatever they did was Ino and Sakura, the loudest and in Naruto's opinion worst of the fangirls. He sighed and slammed his head into the desk mumbling about taking a nap and that's when everyone heard screams from outside the academy, Naruto smirked knowingly causing Shikamaru to sigh and Choji to chuckle lightly, everyone else looked confused, so Iruka got everyone's attention.
"Alright everyone, today is going to be your last in the academy" He said with a small smile "And I hope you use everything you learned here out in the field to become the best Shinobi you all can and survive outside the village whenever you end up going out" As soon as he finished the full speech his teaching assistant Mizuki walked in and Naruto groaned as he looked him "Now if you'd all turn to the front me and Mizuki will be handing out the written exam and it should take 45 minutes to an hour to finish the exam" Iruka finished as he walked up Naruto's row placing the exams down on the desk in front of students, when he reached Naruto's row he whispered to them "I expect you to fill in all the answers this time you three" as he placed their exam down and left down the next set of stairs making the three groan.
~1 hour later~
Naruto had been finished for about half an hour now as he kept his head rested on the desk in front of him spinning the paper with his finger holding it down, after doing it for 30 minutes Iruka called for the exam to end and for the students to hand in their exams on their way to the practical exam area. As Naruto passed and handed his exam he walked to the Kunai and Shuriken throwing range as they knew the order of the exam from all the practice exams they did. Naruto sat on one of the benches and sighed as he watched the civilians doing their throws as he then groaned and muttered "I really wish I didn't have to hide my skills"
In response he got a deep chuckle in his mind "Ah but Naruto, being a liar and secretive is part of being a Shinobi and you know that" Naruto groaned in response as he lay back making Kurama laugh at his best friend and partners expense.
'Ya know if we graduated early we would of been jonin and had the skills to probably beat Sandaime-sama right?' Naruto replied to the Kyuubi in his mindscape getting silence as his response as he smirked and then heard his name being called as he jumped up "Yeah? Oh my go?" he asked getting a nod from Iruka as he nodded and walked over and touched the Kunai that the academy had offered him and then purposely tried to cut his finger tip with them only to find it not even scratch the surface of his skin "Hey Iruka-sensei?" Naruto asked.
"Yes?" Iruka replied confused
"Shouldn't the academy kunai and shuriken actually pierce the skin if you want it to go into a log?" Naruto asked showing Iruka how he was trying to stab his finger but it didn't even scratch or nip the skin to make it bleed. Iruka looked confused and then nodded before connecting the dots and sighing.
"Use your own Naruto" Iruka said as he turned around "By next year we'll be having a staff reduction it seems" Iruka muttered to himself as he filed that away to mention to the Hokage.
Naruto nodded and pulled out 10 Kunai and Shuriken from his pouch and holster respectively, he held the kunai in the gaps between his finished with the last for each hand hanging from his pinky, he threw the four between the gaps of his fingers after throwing the two from his pinky fingers in the air, as the ones in between his fingers left he caught the two he threw up and threw them after the rest, the class watched the performance in awe while Naruto walked to his Shuriken holster and pulled out his Shuriken not even bothering to check where the Kunai went as the threw them after and they sailed through the air all nailing the target in vital areas such as the head, heart, lungs, femurs, oesophagus and larynx with a lot of the boys cringing at the sight of his last ones landing where the testicles are. Naruto turned to Iruka and asked "So Sensei what did I score?"
Iruka snapped out of his cringing and looked at the other Kunai "10 on Kunai and 10 on Shuriken" Iruka said as he clapped his hands and escorted them to the next part as Naruto was collecting his kunai and shuriken which landed next to his kunai on the dummy. After Naruto finished collecting them he walked to the taijutsu arena and put his kunai and shuriken away as he sat with his back to the wall. After all the other fights Naruto saw Iruka cringe as he called out the last names. "Uchiha Sasuke versus Uchiha Naruto" as Iruka finished he heard Naruto walk past him and towards the ring. As soon as Naruto got there his eyes narrowed seeing the arrogant look on Sasuke's face making him inwardly sigh.
"You may as well give up dobe, after all you can't beat me, the clan head" Sasuke said as Naruto sighed and looked at Sasuke impassively.
"I'll have you know Itachi is clan head until something may happen to him, even if he isn't apart of this village he is still the clan head" Naruto said before continuing "And I see Fugaku filled your head with a bunch of bullshit before he died" as he finished he saw Sasuke was clearly pissed off and Iruka called them to do the seal of confrontation as Naruto held out his hand with the seal formed, Sasuke just swatted his hand away making Naruto smile "I guess that means start Iruka-sensei" Naruto said making Iruka sigh and nod, as soon as he nodded Sasuke broke into a sprint towards Naruto and started to fight in the interceptor fist which was the Uchiha's main taijutsu style, Naruto kept dodging all the attacks on him as he looked as if he were dancing and forcing Sasuke to dance with him, after a while Naruto had seen enough and used his palm for hit Sasuke in the gut, as soon as the attack landed Sasuke's body contorted around Naruto's hand as he was winded then launched across the podium they were on, Naruto made sure to keep the strength just low enough so Sasuke wouldn't fall out as Naruto sighed and walked out "Sasuke wins, I forfeited as he can't even land a hit on me" as Naruto finished he sat down and Iruka called the match to finish.
After Sasuke recovered enough he glared at Naruto who seemed to not notice as he waiting for the Ninjutsu portion of the exams after a while he was called up last and Naruto walked down to the front "Okay Naruto the jutsu we need you to perform is the Kawarimi, Henge then finally the Bushin" Naruto nodded and did a Kawarimi without hand signs to replace himself with the chalk on the chalk board making Naruto stand infront of it, after he did it the other way and then preformed the henge to make himself look like Hiruzen Sarutobi in his Hokage robes and then turned back to himself and finally preformed the Kage Bushin which he got from his father's notes flawlessly and without a seal, this surprised the whole class as Iruka nodded again and handed Naruto a hitai-ate making Naruto smile down at it softly. After he walked to his seat he sat down only to groan as an Anbu appeared and whispered to Iruka making Iruka sigh "Naruto Hokage-sama wishes to speak to you" Iruka said as Naruto got up and nodded before disappearing in a smokeless shunshin surprising Iruka severly "H-How?" Iruka asked and the Anbu looked at him.
"His cousin was Shunshin no Shisui" the Anbu said before disappearing making Mizuki pale and Iruka to look stunned as Naruto never mentioned his family apart from his mother. Sasuke though growled and thought of ways to get Naruto to teach him everything as he couldn't use the clan head status.
~Council Chambers~
Naruto appeared infront of Hiruzen and then sat at the chair that was slightly pulled out for him, as soon as he sat down Hiruzen cleared his throat and asked "So Naruto, did you do this morning?" he asked as seriously as he could without bursting out into laughter.
Naruto looked confused and made a thinking pose "Well this morning I made and ate breakfast, bacon, sausage, eggs some other stuff then I did my morning routine of running along the village walls, accidentally into Maito Gai" he shivered as did everyone in the room "Then went to have a shower get dressed and left for the academy, where Washi-san (Eagle) just got me form after graduating" Naruto finished with a nod as if to confirm his thoughts "Yeah that's all" Naruto finished as Hiruzen nodded "Why so Sandaime-sama?" Naruto asked making Hiruzen look to the fuming civilian council members.
"Because the honorable council believes that you broke into their homes and pranked them all" Hiruzen answered making Naruto fake a hurt look.
"But what reason would I have to break into the almighty civilian council members houses and prank them?" Naruto asked sarcastically before smirking "Even if I did do something, they can't do anything as I am now a shinobi, I fall under the jurisdiction of the Shinobi council and the Hokage himself and the civilian council can only command and take part in civilian affairs as stated in the rules of the village and the founding members of the village such as Shodaime-sama, Nidaime-sama and Madara-jiji" Naruto smirk turned more sinister "It was one of the first rules the two clans agreed on" Naruto looked to the Hokage and said "It falls under Article 17 sub-paragraph 13, The civilian council are only to be present when there is a threat to the village other than that they can only call council meetings if the villages economy is in danger or if a member of the council recently died, apart from that they shouldn't have a say in anything other than the merchant guild in Konoha or when a civilian member plans to move outside of the village, where it states if said person has a family member who plans to become a shinobi they come back to Konoha and they join our academy." Naruto finished as the Hokage looked stunned and looked in the books for it and found it "And with it being a founding rule of Konoha it doesn't need a vote nor can it be vetoed of over ruled unless the Fire Daimyo says that it is over ruled and even then he needs a very large reason to reinstate the civilian council such as war time council or the village isn't in a good place under the current hokage" Naruto finished making the Hokage grin and the Shinobi council to sit there speechless.
Hiruzen smirked and looked to the civilian council "So I see that I missed that article in the rules, I believe it's time you all left" he finished making the fuming council look defeated and leave the council chambers as Naruto sighed.
"And when it comes to the elder council Hokage-sama" Naruto said catching the attention of the Hokage, the clan heads and the Elders "They are only here to advise you, they legally can't assign missions to the Shinobi of the village unless there is a time where Konoha is left without a leader and even then they need to have the Clan heads read the description and then send it to the Fire Daimyo, they aren't even supposed to be in council meetings, they are supposed to get a rundown after the meetings and then see what advice they can give you to make you come to a decision, unless it damages Konoha" Naruto finished with a smirk seeing the shocked faces on the council apart from Danzo who's teeth were gritted, but become shocked when he saw Naruto mouth checkmate and grin, then it became horrified as Naruto continued "And I'd like to know something Hokage-sama"
Hiruzen looked intrigued and nodded "Yes what is it Naruto?"
Naruto's smirk grew as he looked at Hiruzen getting a raised eyebrow "Did you assign Elder member Danzo Shimura a mission to come to me to train me whilst I was in the academy?" Naruto asked surprising everyone but Danzo who paled "Or maybe you assigned him some Anbu with blank masks and NE on them? Or, and here's my favorite part" Naruto smirked and looked Danzo dead in the eyes "Maybe you gave him permission to send said Anbu to the graves of the fallen Uchiha from the Uchiha Massacre to remove the eyes from my dead clansmen?" Naruto put the final nail in the proverbial coffin and Danzo left as soon as Naruto finished making Naruto smirk "And here I was only using hypotheticals, but the way he fled when I finished makes me believe that he didn't have any permission and I just revealed the villages biggest traitor since Orochimaru" Naruto mumbled surprising the clan heads especially the Nara clan as he had deduction skills on par with the rest of his clan.
Hiruzen sighed and chuckled softly before taking a drag of his pipe "If only you could use that mind to figure out the secret to beating paperwork" Hiruzen muttered making Naruto's eyes brighten.
"I knew there was another I wanted to see you today Sandaime-sama!" Naruto exclaimed "I'd like to open a new bank account and I'd like to share with you and the other clan heads the secret" Naruto finished as he shooed away the last two elders Koharu and Homura who left and Naruto smirked as he saw the clan heads eyes sparkle slightly so he cleared his throat "I'll give you all a hint this technique takes a lot of Chakra, people use it for training and practicing dangerous jutsus" Naruto said and they saw them all coming up with blanks still so he sighed "If I was looking to the right and also the left how would I do it" then the realization dawned on them all and Hiruzen walked to Naruto then kneeled down to him.
"Hail the new Professor of Shinobi" Hiruzen said and Naruto patted his head.
"No thanks don't wanna be in the bingo books until I kill someone at least A-rank" and with that Naruto vanished from the council rooms and went home to get some training in before eating and going to sleep.