Annalise didn't know at the moment if it was good that Rafael was seen as a suspect since it meant there would be town guards entering his home to look for evidence.
There was nothing in her room that could connect her to the border, but she would rather not have the town and border guards snooping around the place she was staying.
"Don't worry about it. I would know if Rafael had someone kidnapped or killed and he didn't. If he did, he would have killed all three guards," Logan said to reassure Annalise that there was nothing to worry about. Her employer would not be imprisoned.
"Unless you come into his home and threaten someone he cares for, he will send you out of his home instead of killing you so he doesn't have to deal with the palace sending him letters about his actions," Logan further explained.
Someone would have to get Rafael really angry for him to disregard how the palace would react and kill someone.
