Hi, this is not a chapter, I read your comments and I realized that I'm horrendous at explaining things and leaving many of you confused with unanswered questions. So here I am trying to answer all your questions:
Q1. Will this be yuri
Answer: Sadly no this won't be a yuri novel.
Q2. Doesn't the Sharingan need chakra to work, so would it not work if she didn't wish for chakra?
Answer: Sharingan will still work even if she didn't wish to have chakra. In mha, Sharingan basically became a mutation-type quirk and it would work on its own without the need for chakra.
Q3. Shouldn't she wish for chakra manipulation of chakra control instead of just chakra?
Answer: I'm sorry if I didn't explain it in detail but when she wished for chakra, I try to mean everything about it like chakra manipulation and chakra control.
Q4. What happened to Ying and Yang chakra????
Answer: I haven't dived deep into the chakra as I realized it has bigger lore than I have anticipated. I will try my best to explain it all here. For this fanfic, Chakra will be the life energy of every being. However, Mikoto's family was the only one that can manipulate it. So in general, you could say that Mikoto's family quirks will be the ability to control their life energy and uses it in battle.
So I won't really consider things like Ying or Yang as it would probably hurt my brain trying to understand everything about it. So Ying or Yang chakra won't really be a thing in this novel.
Sorry for the major Naruto fans out there.
Q5. Will she have a Deku mindset of heroes shouldn't kill?
Answer: She won't have a childish mindset like Deku. In the future, she will have to face the choice of ending a villain's life or not.
Q6. Since she's special and gained 5 wishes shouldn't she be very powerful?
Answer: In her wishes, the only power she wanted was sharingan and chakra. She didn't wish to be op so she have to use her own effort to be strong.
I apologised for the confusion I have caused, if you got more questions please comment down below and I will try my best to answer them in another Q&A.