The other Rakata clans had heard what was going on, on the surface of the planet. Most of them had decided to send out their warriors to fight the invading army, since this was their ancestral home, and they weren't going to give it up without a fight.
Nor were they going to sit in their underground cities and wait for the enemy, so the various clans took to the surface to engage the droids.
Fighter's and bombers weren't much help since the entire planet over time has become covered with forest everywhere, so it was hard to attack the enemy who were hiding under the trees without having the enemy location revealed by the droids on the ground.
The Rakata were using the trees to their advantage, ambushing multiple groups of droids at a time. But the droids were too strong and had great coordination, so the ambushes only destroyed a few droids, while the Rakata who attacked suffered the most.
Alexander at first was commanding the droids from the command room on the Venator, but then decided to head into battle so that he can test out his lightsaber form on the Rakata and get the experience of what a battle is like.
When he first encountered a group of Rakata he had used his lightsaber to block the blaster shots. But as he was blocking them to him, time appeared to slow down as he was easily blocking all the Blaster shots.
And when it came to close combat, he felt his body move on its own as he fought with one of the Rakata.
Yrena and Yona advised against him fighting one of the Rakata by himself, but he did it anyway. He wasn't ignoring them since he knew that hey only wanted for him to be safe, but he wanted to be able to fight by himself since if both Yrena and Yona were to be defeated, and he was left to fight by himself without no actual experience than he would probably be defeated easily but by him getting some experience fighting real foes then he will get better.
After successfully winning his first engagement, Alexander had proceeded to conquer another clan's underground city and subjugated the people that were there.
He had all of them taken to the main encampment, which was a place where the Rakata who he subjugated were located. At the encampment, the Rakata were currently having a device put into their heads, which they were told would keep them from betraying Alexander.
Many of the Rakata accepted it, believing that they could prove their loyalty to the chosen one and once again rise in glory. Some other's were reluctant to accept it, but had no choice since they were forced.
It took three weeks of fighting to finally subjugate the entire planet. The total number of Rakata remaining after the fighting was over was 4.5 million, meaning that 500k had died during the war, which was a lot since their species was already so small in numbers.
After all, the Rakata were subjugated and had gotten their implants, Alexander had begun construction of a major city on the planet. But it really wasn't construction, it was more of restoring a city which had been completely overrun with nature from being abandoned for centuries.
The Rakata were small in numbers, but Alexander wanted to have at least three cities on the world. The First city would be the Capital of the planet, while the other two would be placed in strategic locations on the planet.
But first he would have to wait until the droids got done surveying the planet for the location of resources.
After the locations of resources are found, the cities will be built close to those locations in order to effectively mine the resources. For now, he only had plans for three cities but in the future when he reveals his Empire to the Galaxy and start engaging in diplomacy with other Empires his planet will start receiving lots of visitors.
But what he was talking about was probably years away and wouldn't happen anytime soon. And he needs to personally see the rest of the Galaxy first before he reveals his Empire.
And the best way to do that was to see the Galaxy. His first plan was to start gaining fame as a trader or make a corporation. Some people may think that this will require him to work hard, but it won't since in realty he would have droids actually running things while would just be the face of the corporation.
But having a corporation of pure droids would probably get suspicious or might cause some unwarranted problems, so his next idea was to ask TB if he had the knowledge of cloning and if he did, he wanted to start making cloning facilities so that he can make clones who specialize in certain things.
Some Clones would be used for War or some for leading. It was a variety of different things that Alexander could do with the clones. And if TB didn't know the process of making clones, then Alexander would just send a team of stealth droids to Kamino to steal the Kaminoan's research on cloning.
Alexander always liked the clones since they are literally able to be bred for war and their genetic sequence can be altered to anything you like. He could basically make an infinite amount of soldiers, though they will take some time to grow.